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PsychENCODE Interactive Portal for the Integrative Analysis





Cross Disorder Analysis Website (focussing on network visualization)

The cross disorder analysis website is an interactive portal that provides comprehensive access to the results of Gandal et al. 2018: Cross Disorder Capstone 2018 »




QTL queries on Reference Sets (hg19 assembly)

Expression QTLs (eQTLs)


Search eQTL list by gene name or Ensembl ID ('ENSG' + 11 digits + optional '.#'):



Search eQTL list by chromosome region (in format chr#:start-end):


Chromatin QTLs (cQTLs)


Search cQTL list by chromosome region (in format chr#:start-end):


Isoform QTLs (isoQTLs)


Search isoQTL list by transcript name ('GeneName-' + 3-digit transcript # (eg: AC092796.1-001 or GADL1-001)) or Ensembl ID ('ENST' + 11 digits + optional '.#'):



Search isoQTL list by chromosome region (in format chr#:start-end):


Cell Fraction QTLs (fQTLs)


Search fQTL list by cell type (possibilities: "Astrocytes", "Microglia", "Endothelial", "Ex1-8", "In1-8"; case-sensitive):



Search fQTL list by chromosome region (in format chr#:start-end):


Visualization of Networks Associated with Prioritized Modules

Interactive visualizations are available for some of the modules prioritized in SCZ: Prioritized-Module Network Visualization »







PEC Enhancers and QTLs in UCSC Genome Browser

Browse the genome tracks for the PEC enhancers, eQTLS, cQTLs, isoQTLs, and fQTLs in the UCSC Genome browser (opens link to Genome Browser in new tab): PEC DLPFC enhancers and QTLs (hg19) and PEC DLPFC enhancers and QTLs (hg38 assembly)




Hi-C Data Browser Hosted on the Washington University Epigenome Browser

Hi-C contact map showing observed pairwise linkages between gemoic regions: WashU Hi-C Browser »