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PsychENCODE Interactive Portal for the Integrative Analysis





Cross Disorder Analysis Website (focussing on network visualization)

The cross disorder analysis website is an interactive portal that provides comprehensive access to the results of Gandal et al. 2018: Cross Disorder Capstone 2018 »




QTL queries (hg19 assembly)

Expression QTLs (eQTLs)


Search eQTL list by gene name or Ensembl ID ('ENSG' + 11 digits + optional '.#'):



Search eQTL list by chromosome region (in format chr#:start-end):


Chromatin QTLs (cQTLs)


Search cQTL list by chromosome region (in format chr#:start-end):


Isoform QTLs (isoQTLs)


Search isoQTL list by transcript name ('GeneName-' + 3-digit transcript # (eg: AC092796.1-001 or GADL1-001)) or Ensembl ID ('ENST' + 11 digits + optional '.#'):



Search isoQTL list by chromosome region (in format chr#:start-end):


Cell Fraction QTLs (fQTLs)


Search fQTL list by cell type (possibilities: "Astrocytes", "Microglia", "Endothelial", "Ex1-8", "In1-8"; case-sensitive):



Search fQTL list by chromosome region (in format chr#:start-end):





PEC Enhancers and QTLs in UCSC Genome Browser

Browse the genome tracks for the PEC enhancers, eQTLS, cQTLs, isoQTLs, and fQTLs in the UCSC Genome browser (opens link to Genome Browser in new tab): PEC DLPFC enhancers and QTLs (hg19) and PEC DLPFC enhancers and QTLs (hg38 assembly)